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Strategies: Methyl-Filtration

Methyl-filtration, a technique licensed to Orion Genomics, exploits the finding that the majority of retrotransposon and repetitive sequences in maize are methylated.

Plant genomes are comprised of ISLANDS of genes nestled among OCEANS of repetitive junk DNA.



The repetitive DNA is comprised mostly of retrotransposon elements that are heavily methylated (red bars), while genes (black arrows) are not methylated.

With the GeneThrsher® approach...


...genomic subclones are generated by fragmenting DNA from the plant of interest.



The resulting library primarily contains the genespace and reduces the size of complexity of the genome.

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In the spotlight
Release 4.0 - fourth and final assembly of methyl-filtered, high Cot and combined sequence reads are now available.



Release 3.0 - third methylation filtered, high Cot and combined assembly is now
available.



Maize BAC annotations and gene predictions are now available.



Maize Repeat Database can be download now.




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