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Strategies: High-Cot

High Cot selected libraries produced by Jeff Bennetzen at Purdue University exploit the relatively low abundance of the gene sequences, which are present in small number of copies in the genome.

High Cot

  • DNA from immature maize ears sheared to an average size of 1.0 to 2.0 kb
  • Sheared DNA is denatured and then renatured to a C0t value of 800
  • Unrenatured DNA is purified over a HAP column
  • ssDNA converted to dsDNA
  • dsDNA size selected to 1.2 to 2.0 kb
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In the spotlight
Release 4.0 - fourth and final assembly of methyl-filtered, high Cot and combined sequence reads are now available.



Release 3.0 - third methylation filtered, high Cot and combined assembly is now
available.



Maize BAC annotations and gene predictions are now available.



Maize Repeat Database can be download now.




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Karel Schubert: Project Coordinator · maize@danforthcenter.org
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